Phylogeny inference and data analysis, fall 2013

Last modified by varvio@helsinki_fi on 2024/03/27 10:42

Phylogeny inference, seminar, fall 2013

Lecturer

Scope, type and prerequisites

3 cr: Seminar presentation (~30-40min) on a topic and acting as an opponent to another student´s presentation. Topics range from purely statistical and (almost) purely biological - as well as mixtures of these. In addition, a written essay (~8 pages) about the topic.

Prerequisite: The course Biometry and bioinformatics II or the course Phylogeny inference and data analysis which has been in study curriculum in previous years.

Time schedule

II teaching period.

Suggested references for topic tailoring

Paper(s) for a topic	Presenter		Opponent
♦ Phylo_history_1.pdf,Phylo_history_2.pdf	Jimmy 1.		Siru
♦ Phylo_cancer_1.pdf,Phylo_cancer_2.pdf
♦ Phylo_cancer_3.pdf,Phylo_cancer_4.pdf
♦Phylo_celltypes.pdf	Augustine 1.	Igor 2.	Igor
♦Phylo_languages.pdf		Jimmy 2. , Aravind 3.
♦ Phylo_bacteria_1.pdf,Phylo_bacteria_2.pdf		Augustine 2.
♦ Phylo_lateral gene transfer_1.pdf,Phylo_lateral_gene_transfer_2.pdf	Aravind 1.		Nicole
♦Phylo_metagenomics_methods.pdf	Nicole 1.	Sinduja 2., Aravind 2.	Aravind
♦ Phylo_human_metagenomics_1.pdf,Phylo_human_metagenomics_2.pdf		Nicole 2.
♦ Phylo_env_metagenomics_1.pdf,Phylo_env_metagenomics_2.pdf		Nicole 3.
♦ Phylo_statistics_1.pdf,Phylo_statistics_2.pdf	Mitja	America 2.	America
♦ Phylo mammals_1.pdf,Phylo mammals_2.pdf
♦ Phylo virus_1.pdf,Phylo virus_2.pdf	Sinduja 1.		Sahle
♦ Phylo_HMM_1.pdf,Phylo_HMM_2.pdf	America 1.		Mitja
♦ Phylo_HIV.pdf,	Sahle		Sinduja
♦ Protein evolution_1.pdf,Protein evolution_3.pdf	Igor 1.		Augustine

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