Skip to Content

How to access server lmu-ida

Last modified by hajaalin@helsinki_fi on 2025/02/04 06:55

Login

Download and launch Putty (http://www.putty.org/). Set "Host Name" to lmu-ida.biocenter.helsinki.fi.

putty1.png

Accept security message.

putty2.png

Use your AD username and password to login.

putty3.png

Check that icommands work. Type 'ils' on the command line and hit 'Enter'.

putty4.png

 

Configure Ida connection

If you get an error message with the 'ils' command, it means that probably your Ida environment is not yet set. Run 'makeIrodsEnv.sh' script to create a configuration file for the Ida connection. Give your Ida username as the argument.

[hajaalin@lmu-ida ~]$ makeIrodsEnv.sh hajaalin
[hajaalin@lmu-ida ~]$

Verify that the file '.irods/.irodsEnv' was created. Your Ida username should now be on the line starting 'irodsUserName='.

[hajaalin@lmu-ida ~]$ cat .irods/.irodsEnv
irodsHost=ida.csc.fi
irodsPort=1247
irodsUserName=hajaalin
irodsZone=ida
irodsHome=/ida/hy/hy7004
irodsCwd=/ida/hy/hy7004

[hajaalin@lmu-ida ~]$

Log in to Ida with 'iinit'.

[hajaalin@lmu-ida ~]$ iinit
Enter your current iRODS password:
[hajaalin@lmu-ida ~]$

 

LMU-disks on lmu-ida

LMU-active and LMU-archive AD disks are mount read-only on lmu-ida.

[hajaalin@lmu-ida ~]$ ls /mnt/lmu-active/
LMU-active1  LMU-active2
[hajaalin@lmu-ida ~]$ ls /mnt/lmu-archive/
LMU-archive1  LMU-archive2  LMU-archive3

If you want to copy data from Ida to LMU-active, there is one folder mounted in read-write mode for this purpose.

[hajaalin@lmu-ida ~]$ ls /mnt/FROM_IDA/
ahtiaine                                       irsync_20140722-213354_jteo.log
archive_LMU-active2_201410080955_FROM_IDA.log  jmoustak
archive_LMU-active2_201410230742_FROM_IDA.log  jteo
archive_LMU-active2_201504022032_FROM_IDA.log  lazano
archive_LMU-active2_201505292148_FROM_IDA.log  matrix20140425
evtuomin                                       mikmolin
ggateva                                        mkhakala
hajaalin                                       poukkula
hosaari                                        tanhuanp
hsyrjaka