Wiki source code of Genome-wide association studies, fall 2013
Last modified by varvio@helsinki_fi on 2024/03/27 10:40
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| 1 | = (% style="color: rgb(0,51,102);" %)Genome-wide association studies, GWAS-minicourse, fall 2013(%%) = | ||
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| 3 | ===== (% style="color: rgb(0,51,102);" %)Lecturers(%%) ===== | ||
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| 5 | (% style="color: rgb(0,51,102);" %)**Samuli Ripatti**(%%) and (% style="color: rgb(0,51,102);" %)**Matti Pirinen**(%%) from (% style="color: rgb(0,51,102);" %)**FIMM**(% style="color: rgb(0,0,0);" %) | ||
| 6 | Faculty of Medicine master´s or PhD-students: questions in advance to samuli.ripatti at helsinki.fi and matti.pirinen at helsinki.fi | ||
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| 9 | (% style="color: rgb(0,0,0);" %)Questions in advance from other students (for example math-stat, comp sci, biosci): [[Sirkka-Liisa Varvio>>doc:mathstatHenkilokunta.Varvio, Sirkka-Liisa]](%%) | ||
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| 12 | ===== (% style="color: rgb(0,51,102);" %)Scope, type and prerequisites | ||
| 13 | (%%) ===== | ||
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| 15 | 2 cr, advanced/intermediate studies. Prerequisites: Statistics, R; take this course if you are not familiar with R: [[Statistical software tools I(-II)>>url:http://wiki.helsinki.fi/display/mathstatKurssit/Statistical+software+tools%2C+fall+2013||shape="rect"]]. | ||
| 16 | Statistical genetics, concepts which are in the program of this course: [[Biometry and bioinformatics III>>url:http://wiki.helsinki.fi/display/mathstatKurssit/Biometry+and+bioinformatics+III%2C+spring+2014||shape="rect"]] | ||
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| 18 | ===== (% style="color: rgb(0,51,102);" %)Lectures and computer class sessions | ||
| 19 | (%%) ===== | ||
| 20 | |||
| 21 | Tuesday 26.11, 14-16 in CK112 | ||
| 22 | Tuesday 3.12, 14-16 in CK112, 16-18 in C128 | ||
| 23 | Tuesday 10.12, 14-16 in CK112, 16-18 in C128 | ||
| 24 | |||
| 25 | ---- | ||
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| 27 | ===== (% style="color: rgb(0,51,102);" %)Short content description | ||
| 28 | (%%) ===== | ||
| 29 | |||
| 30 | Human Genetics and Biostatistics | ||
| 31 | Heritability - Linkage studies - Association studies - Genotyping technologies - Quality control | ||
| 32 | Statistics of association mapping (significance and power vs. priors and evidence) | ||
| 33 | Examples of real studies - Recent topics in GWAS world (e.g. missing heritability, synthetic associations,...) | ||
| 34 | Why do we think that certain phenotype has a genetic component? | ||
| 35 | How does gene mapping work with family data and how does it work with population data? | ||
| 36 | What kind of data modern genotyping technologies produce and how to analyse them? | ||
| 37 | What have we learned during the last five years from genome-wide association studies? | ||
| 38 | And what have we not learned so far? | ||
| 39 | |||
| 40 | ===== (% style="color: rgb(0,51,102);" %)**Course material**(%%) ===== | ||
| 41 | |||
| 42 | 26.11, 14-16, CK112 [[**Samuli Ripatti lecture** 26.11.2013.pdf>>attach:Samuli Ripatti lecture 26.11.2013.pdf]] | ||
| 43 | |||
| 44 | 3.12 and 10.12, 14-16, CK112 and 16-18 C128 Lectures and practicals by (% style="color: rgb(0,51,102);" %)**Matti Pirinen**(%%), ** [[Material is here>>url:http://www.helsinki.fi/~~mjxpirin/GWAS_course/2013/||shape="rect"]][[url:http://www.helsinki.fi/~~mjxpirin/GWAS_course/2013/||shape="rect"]]** | ||
| 45 | |||
| 46 | ===== (% style="color: rgb(0,51,102);" %)**Exam**(%%) ===== | ||
| 47 | |||
| 48 | Exam is based on the lectures, practicals and literature given in Matti Pirinen page ( [[Material is here>>url:http://www.helsinki.fi/%7Emjxpirin/GWAS_course/2013/||shape="rect"]]** , **material marked as "extra" is NOT required for the exam) . | ||
| 49 | The questions for the exam are sent out 12. December and are to be returned 17. December. | ||
| 50 | |||
| 51 | ===== (% style="color: rgb(0,51,102);" %)[[(% style="color: rgb(0, 51, 102); color: rgb(0, 51, 102)" %)BB III - Moodle>>url:https://moodle.helsinki.fi/course/view.php?id=10433||rel="nofollow" shape="rect" class="external-link"]](%%) ===== | ||
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| 55 | ---- | ||
| 56 | |||
| 57 | ===== [[Registration>>url:https://oodi-www.it.helsinki.fi/hy/opintjakstied.jsp?html=1&Tunniste=57756||shape="rect"]] ===== | ||
| 58 | |||
| 59 | (% style="color: rgb(0,0,0);" %)**Use this** registration if you take only the 2 cr GWAS-minicourse. | ||
| 60 | **Do not use** this registration if you** **take the whole [[(% style="color: rgb(0, 0, 0); color: rgb(0, 0, 0)" %)Biometry and bioinformatics III>>url:http://wiki.helsinki.fi/display/mathstatKurssit/Biometry+and+bioinformatics+III%2C+spring+2014||shape="rect"]](%%) course, of which GWAS-minicourse is one module. **Your registration to BB III covers registration to GWAS.** | ||
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| 62 | Did you forget to register? [[ What to do?>>doc:mathstatOpiskelu.Kysymys4]] | ||
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