Wiki source code of 2022 Bioimage Analysis
Last modified by Mikko Liljeström on 2024/01/30 15:19
Show last authors
| author | version | line-number | content |
|---|---|---|---|
| 1 | == [[Course announcement page>>url:https://www.helsinki.fi/en/news/teaching-studying-at-the-university/bioimage-analysis-course-2022||shape="rect"]] == | ||
| 2 | |||
| 3 | == Lecture Material == | ||
| 4 | |||
| 5 | |||
| 6 | (% class="wrapped" %) | ||
| 7 | |((( | ||
| 8 | **What is an image?** | ||
| 9 | )))|((( | ||
| 10 | Marko Crivaro (Light Microscopy Unit, University of Helsinki) | ||
| 11 | )))|(% colspan="1" %)(% colspan="1" %) | ||
| 12 | ((( | ||
| 13 | (% class="content-wrapper" %) | ||
| 14 | ((( | ||
| 15 | [[What is an image -Slides>>attach:What is an image 2020.pdf]] | ||
| 16 | |||
| 17 | [[What is an image? - Video>>url:https://www.helsinki.fi/fi/unitube/video/962e8a78-1850-4d26-bdba-0f3a7c2d0704||shape="rect"]] | ||
| 18 | ))) | ||
| 19 | ))) | ||
| 20 | |((( | ||
| 21 | **Basics of Imaging** | ||
| 22 | )))|((( | ||
| 23 | Marko Crivaro | ||
| 24 | )))|(% colspan="1" %)(% colspan="1" %) | ||
| 25 | ((( | ||
| 26 | [[Basics of Imaging - Slides>>attach:Basics of Imaging 2020.pdf]] | ||
| 27 | |||
| 28 | [[Basics of Imaging - Video>>url:https://www.helsinki.fi/fi/unitube/video/e0b02948-d91c-4ca1-b0f2-0eface190677||shape="rect"]] | ||
| 29 | ))) | ||
| 30 | |(% colspan="1" %)(% colspan="1" %) | ||
| 31 | ((( | ||
| 32 | **Cell Counting** | ||
| 33 | )))|(% colspan="1" %)(% colspan="1" %) | ||
| 34 | ((( | ||
| 35 | Antti Isomäki (Biomedicum Imaging Unit, University of Helsinki) | ||
| 36 | )))|(% colspan="1" %)(% colspan="1" %) | ||
| 37 | ((( | ||
| 38 | [[attach:biu.FIJI workshop@Cell counting - Image processing workflow.pdf]] | ||
| 39 | ))) | ||
| 40 | |((( | ||
| 41 | **Trusting your Images & Numbers** | ||
| 42 | )))|((( | ||
| 43 | Ville Rantanen (Machine Vision Specialist at Reaktor Innovations, Helsinki) | ||
| 44 | )))|(% colspan="1" %)(% colspan="1" %) | ||
| 45 | ((( | ||
| 46 | [[Trusting your Images & Numbers Slides>>url:https://docs.google.com/presentation/d/1qoXZg3EM8K9VMPDQ-kQBcBJYlBhNwQt4OQNxIQPhM1Q/||shape="rect"]] | ||
| 47 | ))) | ||
| 48 | |((( | ||
| 49 | **Colocalisation** | ||
| 50 | )))|((( | ||
| 51 | Romain Guiet (BioImaging and Optics Platform, Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland) | ||
| 52 | |||
| 53 | |||
| 54 | |||
| 55 | )))|(% colspan="1" %)(% colspan="1" %) | ||
| 56 | ((( | ||
| 57 | [[A localisation tale...- Slides>>url:https://docs.google.com/presentation/d/1wkqBJcMzCG1N-7NJccNyr8cuXVpIsEaaAlgqcON8BaU/edit?usp=sharing||shape="rect"]] | ||
| 58 | ))) | ||
| 59 | |((( | ||
| 60 | **Machine Learning** | ||
| 61 | )))|((( | ||
| 62 | Lassi Paavolainen (Bioimage profiling, Institute for Molecular Medicine Finland (FIMM)) | ||
| 63 | )))|(% colspan="1" %)(% colspan="1" %) | ||
| 64 | ((( | ||
| 65 | (% class="content-wrapper" %) | ||
| 66 | ((( | ||
| 67 | [[Machine Learning - Slides>>attach:ML_Bioimage_Analysis_course_2022.pdf]] | ||
| 68 | ))) | ||
| 69 | ))) | ||
| 70 | |||
| 71 | == (% style="color:#4d4d4d" %)Hands-on workshops(%%) == | ||
| 72 | |||
| 73 | * (% style="color:#4d4d4d" %)[[Cellprofiler>>doc:biu.Biomedicum Imaging Unit.BIU courses.Bioimage Analysis Course 2022.CellProfiler.WebHome]] | ||
| 74 | * (% style="color:#4d4d4d" %)[[FIJI hands-on workshop >>doc:biu.Biomedicum Imaging Unit.BIU courses.Bioimage Analysis Course 2022.FIJI workshop.WebHome]] | ||
| 75 | * (% style="color:#4d4d4d" %)[[doc:biu.Biomedicum Imaging Unit.BIU courses.Bioimage Analysis Course 2022.Imaris.WebHome]] | ||
| 76 | * (% style="color:#4d4d4d" %)[[doc:biu.Biomedicum Imaging Unit.BIU courses.Bioimage Analysis Course 2022.MIB workshop.WebHome]] | ||
| 77 | |||
| 78 | |||
| 79 | |||
| 80 |