Shading correction
Last modified by hajaalin@helsinki_fi on 2024/01/24 07:08
Install cidre (java stand-alone) on Windows
- clone https://github.com/emilroz/cidre
- install Gradle https://gradle.org/install/
in a command prompt:
e:
cd GitHub\cidre_emilroz\trunk\java
c:\HYapp\gradle-6.0.1\bin\gradle-6.0.1\bin\gradle distZip
cd GitHub\cidre_emilroz\trunk\java
c:\HYapp\gradle-6.0.1\bin\gradle-6.0.1\bin\gradle distZip
set data=e:\temp\cidre_test\data\TimePoint_1\neuronstubulinactin_D11_s1_w16167FC73-73DB-41D7-AD10-8A44A4CAE4E7.tif
set data=e:\temp\cidre_test\data\TimePoint_1\neuronstubulinactin_D11_s1_w*.tif
set data=e:\temp\cidre_test\data\TimePoint_1\neuronstubulinactin_*.tif
set data=e:\temp\cidre_test\data\TimePoint_1\*.tif
set data=e:\temp\cidre_test\data\TimePoint_1\
set data=e:\temp\cidre_test\data\TimePoint_1_s1_s2_s3\
set model=e:\temp\cidre_test\model
set corr=e:\temp\cidre_test\corrected
C:\HYapp\cidre-0.0.4\bin\cidre --input %data% --modelOutput %model% --output %corr% --debug
set data=e:\temp\cidre_test\data\TimePoint_1\neuronstubulinactin_D11_s1_w*.tif
set data=e:\temp\cidre_test\data\TimePoint_1\neuronstubulinactin_*.tif
set data=e:\temp\cidre_test\data\TimePoint_1\*.tif
set data=e:\temp\cidre_test\data\TimePoint_1\
set data=e:\temp\cidre_test\data\TimePoint_1_s1_s2_s3\
set model=e:\temp\cidre_test\model
set corr=e:\temp\cidre_test\corrected
C:\HYapp\cidre-0.0.4\bin\cidre --input %data% --modelOutput %model% --output %corr% --debug