Fiji plugins

Extra Plugins that are installed in Fiji installations at LMU AI-, LMU 4D- and HELMI 3D VM workstations. If you want some new plugins to be installed, please ask us to install it by lmu-staff@helsinki.fi  and include the link to the Web page of the plugin. 

• AngioTool
• BigStitcher
• BioVoxxel
• Biovoxxel 3D Box
  Requirements:
  • BioVoxxel 3D Box
  • clij
  • clij2
  • clijx-assistant
  • clijx-assistant-extensions
  • 3D ImageJ Suite
• Extended Depth of Field
  installed only based on requests.
• IJPB-plugins MorphoLibJ
• ImgLib2-Imaris-Bridge
• Labkit
  • the “clij” and “clij2” items. This will add support for GPU accelerated labkit segmentation. 

  • Enter a new site with name imaris-labkit (second column) and url https://sites.imagej.net/imarislabkit/ (third column), and check it (first column).

    

• SlideBook
• StarDist
  • CSBDeep