Lectures: During the first three weeks only Thursdays 14-16 in room B120 and tutoring sessions with negotiable times.
Assignments: exercises, computer work, simulations.
- NOTE: You don´t have to obey the originally given deadlines for submitting assignments 1,2,3,4,5. ,
- , , relevant background:
- NOTE: this dataset works: , submit it to Selecton and take one sequence translated into protein and submit to SIFT. And concentrate on interpreting the results.
Links to servers: http://sift.jcvi.org/, http://selecton.tau.ac.il/ (for collecting data you need this: http://www.ncbi.nlm.nih.gov/)
- , , ,
We have the possibility to exploit the lecture program of Population genomics graduate school having an intensive course in Kumpula and topics closely related to our Statistical genetics course.
Lecturers: Matthieu Foll and Daniel Wegmann from Switzerland, Peter Tiffin from USA, Chris Wheat from UK/Viikki.
Tue 29. Nov, 12.30--> in computer class C128, Assignment 4 introduction
Thu 1. Dec, 14.15 -15 in B120, 15--> in computer class C128, Assignment 5 introduction
, , Lecture slides TBA,
- Data: , , , ,
(Tue 6. Dec is the Independence day of Finland, University is closed)
Thu 8. Dec,
Global distribution of human genomic diversity.pdf, Alejandra
Genetics of financial risk taking.pdf, Xiaofeng
Math-stat laws of genome evolution.pdf, Yang
Principal component analysis and unraveling gene expression, Juha
Protein Sequence and Structure prediction, Muhammed
Thu 15. Dec, 14.15> as long as needed Wed 25. Jan 2012, 15.15 - 18 in D340; this is a meeting room in 3. floor
Gene expression variance in neurology.pdf, Ping (not coming)
p-values and Bayes factors in genetic association studies.pdf, Christian
Markov random fields in GWAS.pdf, Hailin
Stat inference of natural selection shaping immunity genes.pdf, Jimmy
Genetic variants to be discovered.pdf, Jian
Genetic classification by supervised learning.pdf, Chunxiang (?)
Bayesian analysis of population structure, Fitsum
A family based association study, Anju (not coming)
Comparative Studies of de novo Assembly Tools for Nextgeneration Sequencing Technologies, Shafiqul