Phylogeny inference, seminar, fall 2013
Lecturer
Scope, type and prerequisites
3 cr: Seminar presentation (~30-40min) on a topic and acting as an opponent to another student´s presentation. Topics range from purely statistical and (almost) purely biological - as well as mixtures of these. In addition, a written essay (~8 pages) about the topic.
Prerequisite: The course Biometry and bioinformatics II or the course Phylogeny inference and data analysis which has been in study curriculum in previous years.
Time schedule
II teaching period.
Suggested references for topic tailoring
| Paper(s) for a topic | Presenter | Opponent | |
| ♦ Phylo_history_1.pdf, Phylo_history_2.pdf | Jimmy 1. | Siru | |
| ♦ Phylo_cancer_1.pdf, Phylo_cancer_2.pdf | |||
| ♦ Phylo_cancer_3.pdf, Phylo_cancer_4.pdf | |||
| ♦ Phylo_celltypes.pdf | Augustine 1. | Igor 2. | Igor |
| ♦ Phylo_languages.pdf | Jimmy 2. , Aravind 3. | ||
| ♦ Phylo_bacteria_1.pdf, Phylo_bacteria_2.pdf | Augustine 2. | ||
| ♦ Phylo_lateral gene transfer_1.pdf, Phylo_lateral_gene_transfer_2.pdf | Aravind 1. | Nicole | |
| ♦ Phylo_metagenomics_methods.pdf | Nicole 1. | Sinduja 2., Aravind 2. | Aravind |
| ♦ Phylo_human_metagenomics_1.pdf, Phylo_human_metagenomics_2.pdf | Nicole 2. | ||
| ♦ Phylo_env_metagenomics_1.pdf, Phylo_env_metagenomics_2.pdf | Nicole 3. | ||
| ♦ Phylo_statistics_1.pdf, Phylo_statistics_2.pdf | Mitja | America 2. | America |
| ♦ Phylo mammals_1.pdf , Phylo mammals_2.pdf | |||
| ♦ Phylo virus_1.pdf, Phylo virus_2.pdf | Sinduja 1. | Sahle | |
| ♦ Phylo_HMM_1.pdf , Phylo_HMM_2.pdf | America 1. | Mitja | |
| ♦ Phylo_HIV.pdf , | Sahle | Sinduja | |
| ♦ Protein evolution_1.pdf , Protein evolution_3.pdf | Igor 1. | Augustine | |
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